Welcome to OpenSequence.org.
A little about me:
My name is Sergey Ovchinnikov. I majored in Micro/Molecular Biology and minored in Chemistry at Portland State University. I am currently a graduate student at University of Washington for the department of Molecular and Cellular Biology. My advisor is David Baker.
Co-evolution (GREMLIN) based analysis can be found at OPENSEQ.org
- Robust and accurate prediction of residue-residue interactions across protein interfaces using evolutionary information
- Sergey Ovchinnikov, Hetunandan Kamisetty, and David Baker.
- Elife (2014).
- Assessing the utility of coevolution-based residue–residue contact predictions in a sequence-and structure-rich era
- Hetunandan Kamisetty, Sergey Ovchinnikov, and David Baker.
- PNAS 110, no. 39 (2013): 15674-15679.
- Pseudoscorpion mitochondria show rearranged genes and genome-wide reductions of RNA gene sizes and inferred structures, yet typical nucleotide composition bias
- Sergey Ovchinnikov, Susan E Masta
- BMC Evolutionary Biology 2012, 12:31 (12 March 2012)
- Short read assembly pipeline using scripted filters, de novo assembly and manual extension of terminated contigs
- Sergey Ovchinnikov, Mark Fishbein
- PSU McNair Online Journal. Volume 4. (2010)