Welcome to OpenSequence.org

Welcome to OpenSequence.org

A little about me: My name is Sergey Ovchinnikov. I majored in Micro/Molecular Biology and minored in Chemistry at Portland State University. I am currently a graduate student at the University of Washington for the department of Molecular and Cellular Biology. My advisor is David Baker.

Co-evolution (GREMLIN) based analysis can be found at OPENSEQ.org

Protein structure determination using metagenome sequence data

Combining metagenome sequences with GREMLIN and Rosetta to predict new structures. We got quite a bit news coverage:
JGI, The Economist, GeekWire, The Atlantic, C&EN, ScienceNow, NewsBeat ...

Architectures of lipid transport systems for the bacterial outer membrane

06Apr2017 - GREMLIN was recently used to predict contacts and arrangement of proteins within the lipid transport systems! LINK